Last modified on August 27, 2020
Messages from Instructor:
Course Format: Remote
This course is based on the mixture of prereorded video lectures and online live meetings. There is no in-person component.
Video Lectures: Asynchronous
All lectures are prerecorded video streamed from the course web site. Go to course schedule and click the topics of a lecture. Then, you will find videos. Students are required to watch each video lecture before the date given in the course schedule.
Q&A session, Exercise, and Discussion: Online Live Meeting
Students are required to attend live online session in ZOOM held during the regular class hours (Tue. & Thu. 9:30am -- 10:45am). Topics of the discussion are listed in the course schedule. The discussion will be recorded and the videos are available if you should have missed the sessions. Please try to attend the live meeting as much as possible.
Through this course students will learn how the laws of physics play important roles in biological processes in living cells through examples.
Biophysical processes involved in the following biological processes
Ten homework problems will be given. Homework must be turned in electronically by email. Allowed formats are PDF (.pdf), MATLAB script file (.m), Mathematica notebook (.nb). Hand written pages should be scanned in PDF. Do not send picture taken by a cellphone camera app. Use scanner app instead. Microsoft Office Lens (a free app for Android and iPhone) is recommended.
There is no paper exam in this course. Students must complete either a theoretical or a computational project and write a term paper. Proposal, abstract, drafts, and final paper must be submitted as scheduled in the project page. Late submission will result in the substantial loss of points.
Homework carries 50 pts and the term paper 50 pts.
|A||85 or above|
|B||75 or above|
|C||65 or above|
|D||55 or above|
Where the university can, it is providing a Pass/Fail option in case there are circumstances and/or challenges students are encountering related to the ongoing pandemic that might make a Pass/Fail option a better option. If students are not remaining with the default letter grade method for any of their courses, they must select the Pass/Fail grading method for each course individually. This selection is made toward the end of the semester. Once a student selects the option for a Pass/Fail grading method for a particular course, that decision is not reversible regardless of their performance on remaining assignments or final exams.
MATLAB is used in all lectures. The use of MATLAB is required in this course. UAB has a site license and students are elligible to install MATLAB on their computer. Installation instruction is given at https://docs.uabgrid.uab.edu/wiki/Matlab_site_license
Python is another popular computer language. Although we use MATLAB as main language in the lectures, Phython 3 is also supported. If you wish to use Python, Anadonda package is recommended for Microsoft Windows and Mac. (Linux is also supported by Anaconda but it is better to use the python package included in yourLinux distros.) The instructor uses Python 3 (Not Python 2). Download Anaconda for Python 3.7 at https://www.anaconda.com/download/. Every Linux distribution inlucdes Python 3. Use a software installer in your Liux system.
I am available to meet with you virtually via Zoom by appointment during my virtual office hours shown below. Please make an appointment via email.
Campbell Hall 309
Department of Physics
University of Alabama at Birmingham
1300 University Blvd.
Birmingham, AL 35294
© Dr. Ryoichi Kawai, 2020 All Rights Reserved. No part of this website or any of its contents may be reproduced, copied, modified or adapted, without the prior written consent of the author, unless otherwise indicated for stand-alone materials.